Notes | Microbes + Biogeochemistry

Hi, I'm Shane Hogle, a Postdoctoral Associate @ MIT working on topics in marine microbial ecology

2021

Apr 11

2017

Feb 11

Slurm no-number array trick

Feb 11

Jupyter notebook on remote cluster

Jan 19

Installing the bash kernel for Jupyter notebook

Jan 19

Installing Prokka in home folder on a compute cluster

Jan 09

Git and Jekyll Cheatsheet

2016

Dec 04

Slurm Cheatsheet

Dec 03

GNU Parallel for mutlithreaded tasks

Dec 03

2015

Apr 23

Collecting top hits

2014

May 29

Bowtie and Samtools

Apr 16

Process substitution with bash

Apr 15

Nucleotide content of 1st and 2nd positions

Apr 14

Mar 11

Feb 18

Searching a hash